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Table 6 Exploring the dendrogram cut level for modified Walktrap with a maximum cluster size of 100

From: RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters

Dendrogram cut level 200 300 500 700
PPI 29.0% 28.0% 30.2% 32.3%
DSD 4.5 23.3% 23.2% 23.2% 24.5%
DSD 5 27.3% 27.5% 27.4% 28.9%
DSD 5.5 29.6% 31.5% 30.6% 31.8%
DSD 6 28.4% 27.8% 27.5% 24.8%
DSD 6.5 25.0% 26.9% 23.6% 19.9%
  1. The reported number is the percentage of nodes placed into a cluster with a matching annotation (i.e. the statistic we are calling % NEC S). At different dendrogram cut levels, the best percentage is bolded; sometimes it is modified Walktrap run directly on the PPI network, and sometimes it is Walktrap plus DSD at a threshold of 5.5