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Table 6 Performance comparison among SW implementations using the large set

From: SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Implementation SWIFOLD SWAPHI-LS SW# CUDAlign SW# CUDAlign
Accelerator Intel Arria 10 GX Intel Xeon Phi 3120P NVIDIA GTX980 NVIDIA GTX1080
Matrix size (cells) Performance (GCUPS)
1.6T 132.41 31.03 91.54 122.14 193.56 224.15
1.9T 132.41 27.86 84.93 110.77 180.34 231.91
3.7T 132.42 33.66 89.02 119.47 191.59 232.54
4.4T 132.43 30.41 95.61 132.22 138.22 250.78