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Table 3 Top 15 gene sets in down-superset #1 in BRCA subtype analysis

From: GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

Gene Set Terms PScore a gsScore Weightb
PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_7 92.578 0.997 0.166
VANTVEER_BREAST_CANCER_ESR1_DN 80.186 0.811 −0.185
LEI_MYB_TARGETS 55.903 0.800 0.201
DOANE_BREAST_CANCER_ESR1_DN 87.537 0.644 −0.114
CUI_TCF21_TARGETS_2_UP 81.999 0.511 −0.103
ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN 46.415 0.340 0.127
DELACROIX_RARG_BOUND_MEF 55.442 0.336 0.141
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP 37.512 0.230 −0.074
FRASOR_RESPONSE_TO_ESTRADIOL_DN 77.02 0.218 0.108
HATADA_METHYLATED_IN_LUNG_CANCER_UP 76.111 0.215 0.066
SMID_BREAST_CANCER_LUMINAL_A_UP 51.385 0.211 0.077
FOSTER_KDM1A_TARGETS_UP 62.021 0.188 0.091
SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A12 6.764 0.178 −0.096
SWEET_LUNG_CANCER_KRAS_UP 6.548 0.178 0.138
KOYAMA_SEMA3B_TARGETS_DN 24.534 0.176 0.094
  1. aThe PScore of gene set Mann Whitney U test
  2. bThe weight in the model corresponding to the connection of a gene set to the superset