Table 3 Differential expression of alternate pathways/genes in knockout strains compared to wild type (RNAseq Data)
From: Reframing gene essentiality in terms of adaptive flexibility
Keio strain | Experiment #, flask #, | Predicted | Log2(Fold Change) | P-adjusted value |
|---|---|---|---|---|
| Â | clone/population | alternate gene | experiment vs. wild type | Â |
Δ thrA | Exp.1, Flask 5, Clone | metL | 2.18 | 2.06E-7 |
Δ thrA | Exp.2, Flask 1, Population | metL | 1.13 | 3.48E-2 |
Δ ptsI | Exp.1, Flask 5, Clone | galP | 1.73 | 2.50E-2 |
Δ ptsI | Exp.3, Flask 1, Population | galP | 0.908 | 5.46E-1 |
Δ serB | Exp.1, Flask 5, Clone | hisB | 3.75 | 3.60E-11 |
Δ serB | Exp.4, Flask 1, Population | hisB | 3.28 | 2.36E-9 |