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Table 5 AUROC and AUPR comparision for temporal holdout validation

From: GNE: a deep learning framework for gene network inference by aggregating biological information

Methods Yeast E. coli
  AUROC AUPR AUROC AUPR
LINE 0.620 0.611 0.569 0.598
node2vec 0.640 0.609 0.587 0.599
GNE (our model) 0.710 0.683 0.653 0.658
  1. Note that method that achieves the best performance is bold faced