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Table 2 Yeast SL gene-pairs.

From: Human synthetic lethal inference as potential anti-cancer target gene detection

Yeast

Human

Biological process

YMR224C

MRE11A

Single-strand and double-strand-3'-5' exonuclease activity for DNA repair and recombination.

YER016W

MAPRE1

Microtubule assembling

YLR418C

CDC73

PAF1 complex. Interacts with RNA pol II. Causes hyperparathyroidism-jaw tu- mor syndrome

YIL128W

MMS19

Interacts with helicase subunits of NER-transcription factor

YNL299W

PAPD5

Sister chromatid cohesion. Resistance to Campothecin anti-tumor agent

YJL115W

ASF1

Histone chaperone

YJL194W

CDC6

Initiation of DNA replication. Oncogenic activity through repression of INK4/ARF locus

YGL087C

UBE2V2

Ubiquitin-conjugating enzymes without catalytic activity

YJL013C

BUB1

Involved in cell cycle checkpoint enforcement. Colorectal cancer

YGL058W

UBE2B

Central roll in postreplicative DNA repair in eukaryotic cells

YKL113C

FEN1

Removes 5' overhanging flaps in DNA repair and Okazaki fragments. Fast tumor progress

YGL240W

ANAPC10

Component of anaphase promoting complex (APC), progression through mitosis and G1 phase

*YDL132W

CUL1

Core component of multiple cullin-RING-based SCF which mediate the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription.

YOL133W

RBX1

Component of the SCF.

*YBR087W

RFC3

form a complex required by DNA polymerase delta and epsilon.

YNL102W

POLA1

DNA polymerase subunit.

*YJR068W

RFC4

form a complex recruited by DNA polymerase

YDL102W

POLD1

DNA polymerase subunit

  1. Human homologs of the SL gene-pairs and the biological process that they fulfill. A preliminary candidates list, where a human gene is cancer-related (in bold) and its SL partner is not known to be directly related with cancer. Asterisk symbol indicates SL partners that belong to the same cellular pathway (within-pathway model: [23]) and are essential.