Inferring modules from human protein interactome classes

BMC Systems Biology

Table 9 GO-based annotation of residual MCODE modules

	n	n.ex	ex.mean	cor.mean	mf.mean	bp.mean	cc.mean
Int-1	14	13	7.37	0.1	0.49	0.44	0.5
Int-2	9	7	7.83	-0.02	0.27	0.24	0.52
Int-3	13	9	8.66	0.33	0.47	0.41	0.66
Int-4	13	12	8.29	0.06	0.4	0.44	0.58
Int-6	75	68	8.46	0.2	0.24	0.18	0.4
Int-7	58	43	8.3	0.19	0.26	0.16	0.38
Int-8	47	39	9.1	0.23	0.25	0.17	0.44
Int-9	74	70	9.44	0.28	0.27	0.24	0.43
Int-10	10	6	10.28	0.77	0.65	0.43	0.77
Int-11	29	27	9.12	0.4	0.36	0.33	0.63
Int-12	32	28	8.72	0.35	0.31	0.41	0.61
Int-13	79	46	9.99	0.49	0.36	0.31	0.48
Int-14	29	12	9.77	0.23	0.37	0.44	0.43
Lit-1	5	5	7.87	0.02	0.53	0.06	0.46
Lit-2	7	7	8.47	-0.01	0.44	0.32	0.74
Lit-3	145	139	8.42	0.06	0.25	0.15	0.35
Lit-5	5	2	8.69	0.16	0.3	0.16	0.61
Lit-6	144	140	8.69	0.1	0.26	0.19	0.41
Lit-7	21	21	7.98	0.05	0.33	0.19	0.39
Lit-8	98	96	8.72	0.16	0.24	0.24	0.41
Lit-9	15	15	8.67	0.15	0.26	0.2	0.45
Lit-10	128	122	8.62	0.21	0.28	0.16	0.42
Lit-12	40	39	8.79	0.23	0.29	0.28	0.51
Ortho-1	6	3	11.12	0.67	0.32	0.37	0.39
Ortho-3	12	8	8.65	0.32	0.45	0.37	0.66
Ortho-6	13	6	8.38	0.24	0.28	0.2	0.53
Ortho-7	10	10	9.16	0.12	0.44	0.21	0.68
Ortho-8	23	20	10.08	0.51	0.35	0.33	0.56
Ortho-9	10	6	10.28	0.77	0.65	0.43	0.77
Ortho-11	44	31	10.58	0.53	0.35	0.43	0.48
Ortho-12	35	15	8.81	0.45	0.44	0.28	0.64
Ortho-13	35	15	8.81	0.45	0.44	0.28	0.64
Ortho-14	29	12	9.77	0.23	0.37	0.44	0.43
HTP-1	67	56	8.74	0.12	0.3	0.16	0.41
HTP-2	17	15	9.23	0.17	0.45	0.16	0.44
HTP-3	20	18	9.06	0.08	0.45	0.28	0.5
HTP-4	17	15	8.83	0.14	0.38	0.16	0.37

GO-based annotation results for MCODE modules. Values in bold font are above the 0.5 threshold. The listed groups have not passed at least the two required GO thresholds, and thus received a low score.

ISSN: 1752-0509