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Table 9 GO-based annotation of residual MCODE modules

From: Inferring modules from human protein interactome classes

  n n.ex ex.mean cor.mean mf.mean bp.mean cc.mean
Int-1 14 13 7.37 0.1 0.49 0.44 0.5
Int-2 9 7 7.83 -0.02 0.27 0.24 0.52
Int-3 13 9 8.66 0.33 0.47 0.41 0.66
Int-4 13 12 8.29 0.06 0.4 0.44 0.58
Int-6 75 68 8.46 0.2 0.24 0.18 0.4
Int-7 58 43 8.3 0.19 0.26 0.16 0.38
Int-8 47 39 9.1 0.23 0.25 0.17 0.44
Int-9 74 70 9.44 0.28 0.27 0.24 0.43
Int-10 10 6 10.28 0.77 0.65 0.43 0.77
Int-11 29 27 9.12 0.4 0.36 0.33 0.63
Int-12 32 28 8.72 0.35 0.31 0.41 0.61
Int-13 79 46 9.99 0.49 0.36 0.31 0.48
Int-14 29 12 9.77 0.23 0.37 0.44 0.43
Lit-1 5 5 7.87 0.02 0.53 0.06 0.46
Lit-2 7 7 8.47 -0.01 0.44 0.32 0.74
Lit-3 145 139 8.42 0.06 0.25 0.15 0.35
Lit-5 5 2 8.69 0.16 0.3 0.16 0.61
Lit-6 144 140 8.69 0.1 0.26 0.19 0.41
Lit-7 21 21 7.98 0.05 0.33 0.19 0.39
Lit-8 98 96 8.72 0.16 0.24 0.24 0.41
Lit-9 15 15 8.67 0.15 0.26 0.2 0.45
Lit-10 128 122 8.62 0.21 0.28 0.16 0.42
Lit-12 40 39 8.79 0.23 0.29 0.28 0.51
Ortho-1 6 3 11.12 0.67 0.32 0.37 0.39
Ortho-3 12 8 8.65 0.32 0.45 0.37 0.66
Ortho-6 13 6 8.38 0.24 0.28 0.2 0.53
Ortho-7 10 10 9.16 0.12 0.44 0.21 0.68
Ortho-8 23 20 10.08 0.51 0.35 0.33 0.56
Ortho-9 10 6 10.28 0.77 0.65 0.43 0.77
Ortho-11 44 31 10.58 0.53 0.35 0.43 0.48
Ortho-12 35 15 8.81 0.45 0.44 0.28 0.64
Ortho-13 35 15 8.81 0.45 0.44 0.28 0.64
Ortho-14 29 12 9.77 0.23 0.37 0.44 0.43
HTP-1 67 56 8.74 0.12 0.3 0.16 0.41
HTP-2 17 15 9.23 0.17 0.45 0.16 0.44
HTP-3 20 18 9.06 0.08 0.45 0.28 0.5
HTP-4 17 15 8.83 0.14 0.38 0.16 0.37
  1. GO-based annotation results for MCODE modules. Values in bold font are above the 0.5 threshold. The listed groups have not passed at least the two required GO thresholds, and thus received a low score.