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Table 1 Statistics for the four sets of mRNA expression data used in our analyses

From: Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach

Form of stress

# of transcripts

# of genes in the model

# of genes up/down regulated

# of affected reactions

% of total active reactions

Temperature change,

259

80

68

65

13

strain 201

     

Temperature change,

507

207

138

202

41

strain KIM5

     

Streptomycin

345

131

110

153

31

Chloramphenicol

738

207

183

267

54

  1. The number of up/down regulated genes in the GX-FBA simulations differs from the number of genes present in the model because of the imposed selection criterion (see Methods).
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BMC Systems Biology

ISSN: 1752-0509

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