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Table 1 Statistics for the four sets of mRNA expression data used in our analyses

From: Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach

Form of stress # of transcripts # of genes in the model # of genes up/down regulated # of affected reactions % of total active reactions
Temperature change, 259 80 68 65 13
strain 201      
Temperature change, 507 207 138 202 41
strain KIM5      
Streptomycin 345 131 110 153 31
Chloramphenicol 738 207 183 267 54
  1. The number of up/down regulated genes in the GX-FBA simulations differs from the number of genes present in the model because of the imposed selection criterion (see Methods).