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Table 2 Optimal Values of Parameters Used to Describe the Network

From: A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations

Description

Parameter

Value

Units

% Error

Cdc6 production

k1

15.982

(Mol./cell) x min-1

8.86

Cdc6 degradation

k2

0.001

(Mol./cell)-1 x min-1

22.76

Dbf4 production

k3

1368.220

(Mol./cell) x min-1

17.18

Dbf4 degradation

k4

2.440

(Mol./cell)-1 x min-1

17.82

Cdc6 association with ORC

k5

0.016

(Mol./cell)-1 x min-1

30.86

Cdc6 dissociation from ORC

k5r

675.422

min-1

861.23

MCM-Cdt1 import

k6

1.015

(Mol./cell)-1 x min-1

24.88

MCM loading

k7

275.675

(Mol./cell)-1 x min-1

827.56

Cdt1 export

k8

1.732

(Mol./cell)-1 x min-1

41.81

Dissociation of MCM·Cdt1

k9

100.881

min-1

39.84

Re-association of MCM·Cdt1

k9r

1042.739

(Mol./cell)-1 x min-1

41.98

Dissociation of Cdc6 from RC3

k10

936.745

min-1

32.07

Re-association of Cdc6 with RC3

k10r

352.504

(Mol./cell)-1 x min-1

29.39

Unloading of MCM from RC4

k11

885.147

min-1

29.61

Dbf4 association with RC4

k12

0.568

(Mol./cell)-1 x min-1

38.91

Dbf4 dissociation with RC4

k12r

192.628

min-1

54.52

Association of Cdc45 with RC5

k13

0.528

(Mol./cell)-1 x min-1

54.16

Fork Firing

k14

0.237

min-1

30.08

Fork disassembly

k15

0.097

min-1

16.52

MCM export

k16

3.196

min-1

41.82

Phosphorylation of ORC

k17

13.313

min-1

239.26

Dephosphorylation of ORC

k18

2.497

Mol./cell

43.63

Michealis constant for import of MCM

KM1

195.302

Mol./cell

2123.53

Michealis constant for association of Cdc45

KM2

8.248

Mol./cell

2094.64

  1. These values were used to solve the ODEs in our consensus model. The percentage error for each parameter is indicated.