Figure 1

Pathway Tools visualization of EcoCyc–18.0–GEM flux during aerobic transition. Example visualization of EcoCyc–18.0–GEM flux during a transition from anaerobic to aerobic growth, created within the interactive Cellular Overview diagram in Pathway Tools. The upper bound of glucose uptake is set to 10 mmol/gCDW/hr, while the upper bound of oxygen uptake is increased from 0 to 20 mmol/gCDW/hr in 2.5 mmol/gCDW/hr steps. Omics Popups are used to illustrate flux through acetaldehyde dehydrogenase, pyruvate-formate lyase, phosphoglucose isomerase, glyceraldehyde 3-phosphate dehydrogenase, cis-aconitate hydratase, and valine biosynthesis.