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Table 13 EcoCyc–18.0–GEM nutrient utilization prediction results

From: A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

Nutrient utilization Aerobic PM Anaerobic PM Conventional
(sim/exp)    
True positive 137 35 17
(growth/growth)    
False positive 15 14 0
(growth/no growth)    
False negative 46 8 0
(no growth/growth)    
True negative 115 39 5
(no growth/no growth)    
  1. Aerobic PM: 313 absolute consensus results from Biolog Phenotype Microarray carbon, nitrogen, sulfur, and phosphorus source tests (Biolog plates PM1–4) conducted under aerobic conditions. Anaerobic PM: 96 Biolog Phenotype Microarray carbon source tests (Biolog plates PM1–4) conducted under anaerobic conditions. Conventional: 22 E. coli minimal growth media described in EcoCyc.