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Table 13 EcoCyc–18.0–GEM nutrient utilization prediction results

From: A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

Nutrient utilization

Aerobic PM

Anaerobic PM

Conventional

(sim/exp)

   

True positive

137

35

17

(growth/growth)

   

False positive

15

14

0

(growth/no growth)

   

False negative

46

8

0

(no growth/growth)

   

True negative

115

39

5

(no growth/no growth)

   
  1. Aerobic PM: 313 absolute consensus results from Biolog Phenotype Microarray carbon, nitrogen, sulfur, and phosphorus source tests (Biolog plates PM1–4) conducted under aerobic conditions. Anaerobic PM: 96 Biolog Phenotype Microarray carbon source tests (Biolog plates PM1–4) conducted under anaerobic conditions. Conventional: 22 E. coli minimal growth media described in EcoCyc.
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BMC Systems Biology

ISSN: 1752-0509

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