MAQC: The MicroArray Quality Control Consortium. Nature Biotechnology. 2006, 24: 1039-1169.
Article
Google Scholar
Ellinger-Ziegelbauer H, Gmuender H, Bandenburg A, Ahr HJ: Prediction of a carcinogenic potential of rat hepatocarcinogens using toxicogenomics analysis of short-term in vivo studies. Mutat Res. 2008, 637: 23-39. 10.1016/j.mrfmmm.2007.06.010
Article
CAS
PubMed
Google Scholar
Fielden MR, Brennan R, Gollub J: A gene expression biomarker provides early prediction and mechanistic assessment of hepatic tumor induction by nongenotoxic chemicals. Toxicol Sci. 2007, 99: 90-100. 10.1093/toxsci/kfm156
Article
CAS
PubMed
Google Scholar
Nie AY, McMillian M, Parker JB, Leone A, Bryant S, Yieh L, Bittner A, Nelson J, Carmen A, Wan J, Lord PG: Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity. Mol Carcinog. 2006, 45: 914-933. 10.1002/mc.20205
Article
CAS
PubMed
Google Scholar
van Delft JH, van Agen E, van Breda SG, Herwijnen MH, Staal YC, Kleinjans JC: Discrimination of genotoxic from non-genotoxic carcinogens by gene expression profiling. Carcinogenesis. 2004, 25: 1265-1276. 10.1093/carcin/bgh108
Article
CAS
PubMed
Google Scholar
van Delft JH, van Agen E, van Breda SG, Herwijnen MH, Staal YC, Kleinjans JC: Comparison of supervised clustering methods to discriminate genotoxic from non-genotoxic carcinogens by gene expression profiling. Mutat Res. 2005, 575: 17-33. 10.1016/j.mrfmmm.2005.02.006
Article
CAS
PubMed
Google Scholar
Woods CG, Kosyk O, Bradford BU, Ross PK, Burns AM, Cunningham ML, Qu P, Ibrahim JG, Rusyn I: Time course investigation of PPARalpha- and Kupffer cell-dependent effects of WY-14, 643 in mouse liver using microarray gene expression. Toxicol Appl Pharmacol. 2007, 225: 267-277. 10.1016/j.taap.2007.08.028
Article
PubMed Central
CAS
PubMed
Google Scholar
Boverhof DR, Burgoon LD, Tashiro C, Sharratt B, Chittim B, Harkema JR, Mendrick DL, Zacharewski TR: Comparative toxicogenomic analysis of the hepatotoxic effects of TCDD in Sprague Dawley rats and C57BL/6 mice. Toxicol Sci. 2006, 94: 398-416. 10.1093/toxsci/kfl100
Article
CAS
PubMed
Google Scholar
Dere E, Boverhof DR, Burgoon LD, Zacharewski TR: In vivo-in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue. BMC Genomics. 2006, 7: 80- 10.1186/1471-2164-7-80
Article
PubMed Central
PubMed
Google Scholar
Kim S, Dere E, Burgoon LD, Chang CC, Zacharewski TR: Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells. Toxicol Sci. 2009, 112: 229-244. 10.1093/toxsci/kfp189
Article
PubMed Central
CAS
PubMed
Google Scholar
Lindon JC, Holmes E, Bollard ME, Stanley EG, Nicholson JK: Metabonomics technologies and their applications in physiological monitoring, drug safety assessment and disease diagnosis. Biomarkers. 2004, 9: 1-31. 10.1080/13547500410001668379
Article
CAS
PubMed
Google Scholar
van Ravenzwaay B, Cunha GC, Leibold E, Looser R, Mellert W, Prokoudine A, Walk T, Wiemer J: The use of metabolomics for the discovery of new biomarkers of effect. Toxicol Lett. 2007, 172: 21-28. 10.1016/j.toxlet.2007.05.021
Article
CAS
PubMed
Google Scholar
Coen M, Holmes E, Lindon JC, Nicholson JK: NMR-Based Metabolic Profiling and Metabonomic Approaches to Problems in Molecular Toxicology. Chem Res Toxicol. 2008, 21: 9-27. 10.1021/tx700335d
Article
CAS
PubMed
Google Scholar
Robertson DG: Metabonomics in toxicology: a review. Toxicol Sci. 2005, 85: 809-822. 10.1093/toxsci/kfi102
Article
CAS
PubMed
Google Scholar
Coen M, Ruepp SU, Lindon JC, Nicholson JK, Pognan F, Lenz EM, Wilson ID: Integrated application of transcriptomics and metabonomics yields new insight into the toxicity due to paracetamol in the mouse. J Pharm Biomed Anal. 2004, 35: 93-105. 10.1016/j.jpba.2003.12.019
Article
CAS
PubMed
Google Scholar
Craig A, Sidaway J, Holmes E, Orton T, Jackson D, Rowlinson R, Nickson J, Tonge R, Wilson I, Nicholson J: Systems toxicology: integrated genomic, proteomic and metabonomic analysis of methapyrilene induced hepatotoxicity in the rat. J Proteome Res. 2006, 5: 1586-1601. 10.1021/pr0503376
Article
CAS
PubMed
Google Scholar
Heijne WH, Lamers RJ, van Bladeren PJ, Groten JP, van Nesselrooij JH, van Ommen B: Profiles of metabolites and gene expression in rats with chemically induced hepatic necrosis. Toxicol Pathol. 2005, 33: 425-433. 10.1080/01926230590958146
Article
CAS
PubMed
Google Scholar
Kleno TG, Kiehr B, Baunsgaard D, Sidelmann UG: Combination of 'omics' data to investigate the mechanism(s) of hydrazine-induced hepatotoxicity in rats and to identify potential biomarkers. Biomarkers. 2004, 9: 116-138. 10.1080/13547500410001728408
Article
CAS
PubMed
Google Scholar
Toye AA, Dumas ME, Blancher C, Rothwell AR, Fearnside JF, Wilder SP, Bihoreau MT, Cloarec O, Azzouzi I, Young S, et al.: Subtle metabolic and liver gene transcriptional changes underlie diet-induced fatty liver susceptibility in insulin-resistant mice. Diabetologia. 2007, 50: 1867-1879. 10.1007/s00125-007-0738-5
Article
CAS
PubMed
Google Scholar
Collins FS, Gray GM, Bucher JR: Toxicology. Transforming environmental health protection. Science. 2008, 319: 906-907. 10.1126/science.1154619
Article
PubMed Central
CAS
PubMed
Google Scholar
IARC: IARC Working Group on the Evaluation of Carcinogenic Risks to Humans: Polychlorinated Dibenzo-Para-Dioxins and Polychlorinated Dibenzofurans. Lyon, France, 4-11 February 1997. IARC Monogr Eval Carcinog Risks Hum. 1997, 69: 1-631.
Google Scholar
NTP: NTP 11th Report on Carcinogens. Rep Carcinog. 2005, 1-A32.
Google Scholar
Sorg O, Zennegg M, Schmid P, Fedosyuk R, Valikhnovskyi R, Gaide O, Kniazevych V, Saurat JH: 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) poisoning in Victor Yushchenko: identification and measurement of TCDD metabolites. Lancet. 2009, 374: 1179-1185. 10.1016/S0140-6736(09)60912-0
Article
CAS
PubMed
Google Scholar
Christian BJ, Menahan LA, Peterson RE: Intermediary metabolism of the mature rat following 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin treatment. Toxicol Appl Pharmacol. 1986, 83: 360-378. 10.1016/0041-008X(86)90313-3
Article
CAS
PubMed
Google Scholar
Geusau A, Abraham K, Geissler K, Sator MO, Stingl G, Tschachler E: Severe 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) intoxication: clinical and laboratory effects. Environ Health Perspect. 2001, 109: 865-869. 10.1289/ehp.01109865
Article
PubMed Central
CAS
PubMed
Google Scholar
Jahns GL, Kent MN, Burgoon LD, DelRaso N, Zacharewski TR, Reo NV: Development of analytical methods for NMR spectra and application to a 13C toxicology study. Metabolomics. 2009, 5: 253-262. 10.1007/s11306-008-0148-9.
Article
CAS
Google Scholar
Lakshman MR, Chirtel SJ, Chambers LL, Coutlakis PJ: Effects of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin on lipid synthesis and lipogenic enzymes in the rat. J Pharmacol Exp Ther. 1989, 248: 62-66.
CAS
PubMed
Google Scholar
Thomas T, MacKenzie SA, Gallo MA: Regulation of polyamine biosynthesis by 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD). Toxicol Lett. 1990, 53: 315-325. 10.1016/0378-4274(90)90236-F
Article
CAS
PubMed
Google Scholar
Viluksela M, Unkila M, Pohjanvirta R, Tuomisto JT, Stahl BU, Rozman KK, Tuomisto J: Effects of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) on liver phosphoenolpyruvate carboxykinase (PEPCK) activity, glucose homeostasis and plasma amino acid concentrations in the most TCDD-susceptible and the most TCDD-resistant rat strains. Arch Toxicol. 1999, 73: 323-336. 10.1007/s002040050626
Article
CAS
PubMed
Google Scholar
Burczynski ME, McMillian M, Ciervo J, Li L, Parker JB, Dunn RT, Hicken S, Farr S, Johnson MD: Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells. Toxicol Sci. 2000, 58: 399-415. 10.1093/toxsci/58.2.399
Article
CAS
PubMed
Google Scholar
Harries HM, Fletcher ST, Duggan CM, Baker VA: The use of genomics technology to investigate gene expression changes in cultured human liver cells. Toxicol In Vitro. 2001, 15: 399-405. 10.1016/S0887-2333(01)00043-1
Article
CAS
PubMed
Google Scholar
Hong Y, Muller UR, Lai F: Discriminating two classes of toxicants through expression analysis of HepG2 cells with DNA arrays. Toxicol In Vitro. 2003, 17: 85-92. 10.1016/S0887-2333(02)00122-4
Article
CAS
PubMed
Google Scholar
Rudzok S, Schlink U, Herbarth O, Bauer M: Measuring and modeling of binary mixture effects of pharmaceuticals and nickel on cell viability/cytotoxicity in the human hepatoma derived cell line HepG2. Toxicol Appl Pharmacol. 2010, 244: 336-343. 10.1016/j.taap.2010.01.012
Article
CAS
PubMed
Google Scholar
Guo L, Dial S, Shi L, Branham W, Liu J, Fang JL, Green B, Deng H, Kaput J, Ning B: Similarities and Differences in the Expression of Drug-Metabolizing Enzymes between Human Hepatic Cell Lines and Primary Human Hepatocytes. Drug Metab Dispos. 2010, 39: 528-538.
Article
PubMed
Google Scholar
Jennen DG, Gaj S, Giesbertz PJ, van Delft JH, Evelo CT, Kleinjans JC: Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes. Drug Discov Today. 2010, 15: 851-858. 10.1016/j.drudis.2010.08.002
Article
CAS
PubMed
Google Scholar
Misaki K, Matsui S, Matsuda T: Metabolic enzyme induction by HepG2 cells exposed to oxygenated and nonoxygenated polycyclic aromatic hydrocarbons. Chem Res Toxicol. 2007, 20: 277-283. 10.1021/tx060197u
Article
CAS
PubMed
Google Scholar
Westerink WM, Schoonen WG: Phase II enzyme levels in HepG2 cells and cryopreserved primary human hepatocytes and their induction in HepG2 cells. Toxicol In Vitro. 2007, 21: 1592-1602. 10.1016/j.tiv.2007.06.017
Article
CAS
PubMed
Google Scholar
Westerink WM, Schoonen WG: Cytochrome P450 enzyme levels in HepG2 cells and cryopreserved primary human hepatocytes and their induction in HepG2 cells. Toxicol In Vitro. 2007, 21: 1581-1591. 10.1016/j.tiv.2007.05.014
Article
CAS
PubMed
Google Scholar
van Delft JH, Mathijs K, Staal YC, van Herwijnen MH, Brauers KJ, Boorsma A, Kleinjans JC: Time series analysis of benzo[A]pyrene-induced transcriptome changes suggests that a network of transcription factors regulates the effects on functional gene sets. Toxicol Sci. 2010, 117: 381-392. 10.1093/toxsci/kfq214
Article
CAS
PubMed
Google Scholar
Jennen DG, Magkoufopoulou C, Ketelslegers HB, van Herwijnen MH, Kleinjans JC, van Delft JH: Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010, 115: 66-79. 10.1093/toxsci/kfq026
Article
CAS
PubMed
Google Scholar
Boutros PC, Yan R, Moffat ID, Pohjanvirta R, Okey AB: Transcriptomic responses to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) in liver: comparison of rat and mouse. BMC Genomics. 2008, 9: 419- 10.1186/1471-2164-9-419
Article
PubMed Central
PubMed
Google Scholar
Ruiz-Aracama A, Peijnenburg A, Kleinjans J, Jennen D, van Delft J, Hellfrisch C, Lommen A: An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin. BMC Genomics. 2011, 12: 251- 10.1186/1471-2164-12-251
Article
PubMed Central
CAS
PubMed
Google Scholar
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC: Visualization of omics data for systems biology. Nat Methods. 2010, 7: S56-68. 10.1038/nmeth.1436
Article
CAS
PubMed
Google Scholar
Silva Lima B, Van der Laan JW: Mechanisms of nongenotoxic carcinogenesis and assessment of the human hazard. Regul Toxicol Pharmacol. 2000, 32: 135-143. 10.1006/rtph.2000.1427
Article
CAS
PubMed
Google Scholar
Knerr S, Schaefer J, Both S, Mally A, Dekant W, Schrenk D: 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin induced cytochrome P450s alter the formation of reactive oxygen species in liver cells. Mol Nutr Food Res. 2006, 50: 378-384. 10.1002/mnfr.200500183
Article
CAS
PubMed
Google Scholar
Reichard JF, Dalton TP, Shertzer HG, Puga A: Induction of Oxidative Stress Responses by Dioxin and other Ligands of the Aryl Hydrocarbon Receptor. Dose Response. 2005, 3: 306-331. 10.2203/dose-response.003.03.003.
Article
PubMed Central
CAS
Google Scholar
Ellinger-Ziegelbauer H, Stuart B, Wahle B, Bomann W, Ahr HJ: Comparison of the expression profiles induced by genotoxic and nongenotoxic carcinogens in rat liver. Mutat Res. 2005, 575: 61-84. 10.1016/j.mrfmmm.2005.02.004
Article
CAS
PubMed
Google Scholar
Hayes JD, McLellan LI: Glutathione and glutathione-dependent enzymes represent a co-ordinately regulated defence against oxidative stress. Free Radic Res. 1999, 31: 273-300. 10.1080/10715769900300851
Article
CAS
PubMed
Google Scholar
Wu G, Fang YZ, Yang S, Lupton JR, Turner ND: Glutathione metabolism and its implications for health. J Nutr. 2004, 134: 489-492.
CAS
PubMed
Google Scholar
Senft AP, Dalton TP, Nebert DW, Genter MB, Hutchinson RJ, Shertzer HG: Dioxin increases reactive oxygen production in mouse liver mitochondria. Toxicol Appl Pharmacol. 2002, 178: 15-21. 10.1006/taap.2001.9314
Article
CAS
PubMed
Google Scholar
Senft AP, Dalton TP, Nebert DW, Genter MB, Puga A, Hutchinson RJ, Kerzee JK, Uno S, Shertzer HG: Mitochondrial reactive oxygen production is dependent on the aromatic hydrocarbon receptor. Free Radic Biol Med. 2002, 33: 1268-1278. 10.1016/S0891-5849(02)01014-6
Article
CAS
PubMed
Google Scholar
Aly HA, Domenech O: Cytotoxicity and mitochondrial dysfunction of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) in isolated rat hepatocytes. Toxicol Lett. 2009, 191: 79-87. 10.1016/j.toxlet.2009.08.008
Article
CAS
PubMed
Google Scholar
Lin PH, Lin CH, Huang CC, Chuang MC, Lin P: 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin (TCDD) induces oxidative stress, DNA strand breaks, and poly(ADP-ribose) polymerase-1 activation in human breast carcinoma cell lines. Toxicol Lett. 2007, 172: 146-158. 10.1016/j.toxlet.2007.06.003
Article
CAS
PubMed
Google Scholar
Shertzer HG, Genter MB, Shen D, Nebert DW, Chen Y, Dalton TP: TCDD decreases ATP levels and increases reactive oxygen production through changes in mitochondrial F(0)F(1)-ATP synthase and ubiquinone. Toxicol Appl Pharmacol. 2006, 217: 363-374. 10.1016/j.taap.2006.09.014
Article
PubMed Central
CAS
PubMed
Google Scholar
Malumbres M, Barbacid M: RAS oncogenes: the first 30 years. Nat Rev Cancer. 2003, 3: 459-465. 10.1038/nrc1097
Article
CAS
PubMed
Google Scholar
Wennerberg K, Rossman KL, Der CJ: The Ras superfamily at a glance. J Cell Sci. 2005, 118: 843-846. 10.1242/jcs.01660
Article
CAS
PubMed
Google Scholar
Park R, Kim DH, Kim MS, So HS, Chung HT, Kwon KB, Ryu DG, Kim BR: Association of Shc, Cbl, Grb2, and Sos following treatment with 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin in primary rat hepatocytes. Biochem Biophys Res Commun. 1998, 253: 577-581. 10.1006/bbrc.1998.9816
Article
CAS
PubMed
Google Scholar
Pierre S, Bats AS, Chevallier A, Bui LC, Ambolet-Camoit A, Garlatti M, Aggerbeck M, Barouki R, Coumoul X: Induction of the Ras activator Son of Sevenless 1 by environmental pollutants mediates their effects on cellular proliferation. Biochem Pharmacol. 2011, 81: 304-313. 10.1016/j.bcp.2010.10.003
Article
CAS
PubMed
Google Scholar
Wu G, Bazer FW, Davis TA, Kim SW, Li P, Marc Rhoads J, Carey Satterfield M, Smith SB, Spencer TE, Yin Y: Arginine metabolism and nutrition in growth, health and disease. Amino Acids. 2009, 37: 153-168. 10.1007/s00726-008-0210-y
Article
PubMed Central
CAS
PubMed
Google Scholar
Wiame E, Tyteca D, Pierrot N, Collard F, Amyere M, Noel G, Desmedt J, Nassogne MC, Vikkula M, Octave JN, et al.: Molecular identification of aspartate N-acetyltransferase and its mutation in hypoacetylaspartia. Biochem J. 2010, 425: 127-136. 10.1042/BJ20091024.
Article
CAS
Google Scholar
Mehta V, Namboodiri MA: N-acetylaspartate as an acetyl source in the nervous system. Brain Res Mol Brain Res. 1995, 31: 151-157.
Article
CAS
PubMed
Google Scholar
Lourenco R, Camilo ME: Taurine: a conditionally essential amino acid in humans? An overview in health and disease. Nutr Hosp. 2002, 17: 262-270.
CAS
PubMed
Google Scholar
Russell DW: The enzymes, regulation, and genetics of bile acid synthesis. Annu Rev Biochem. 2003, 72: 137-174. 10.1146/annurev.biochem.72.121801.161712
Article
CAS
PubMed
Google Scholar
Yanagita T, Han SY, Hu Y, Nagao K, Kitajima H, Murakami S: Taurine reduces the secretion of apolipoprotein B100 and lipids in HepG2 cells. Lipids Health Dis. 2008, 7: 38- 10.1186/1476-511X-7-38
Article
PubMed Central
PubMed
Google Scholar
Park SH, Lee H, Park KK, Kim HW, Park T: Taurine-responsive genes related to signal transduction as identified by cDNA microarray analyses of HepG2 cells. J Med Food. 2006, 9: 33-41. 10.1089/jmf.2006.9.33
Article
CAS
PubMed
Google Scholar
Seiler N, Raul F: Polyamines and apoptosis. J Cell Mol Med. 2005, 9: 623-642. 10.1111/j.1582-4934.2005.tb00493.x
Article
CAS
PubMed
Google Scholar
Moinard C, Cynober L, de Bandt JP: Polyamines: metabolism and implications in human diseases. Clin Nutr. 2005, 24: 184-197. 10.1016/j.clnu.2004.11.001
Article
CAS
PubMed
Google Scholar
Casero RA, Marton LJ: Targeting polyamine metabolism and function in cancer and other hyperproliferative diseases. Nat Rev Drug Discov. 2007, 6: 373-390. 10.1038/nrd2243
Article
CAS
PubMed
Google Scholar
Minuk GY: GABA and hepatocellular carcinoma. Mol Cell Biochem. 2000, 207: 105-108. 10.1023/A:1007062802164
Article
CAS
PubMed
Google Scholar
Kleinrok Z, Matuszek M, Jesipowicz J, Matuszek B, Opolski A, Radzikowski C: GABA content and GAD activity in colon tumors taken from patients with colon cancer or from xenografted human colon cancer cells growing as s.c. tumors in athymic nu/nu mice. J Physiol Pharmacol. 1998, 49: 303-310.
CAS
PubMed
Google Scholar
Matuszek M, Jesipowicz M, Kleinrok Z: GABA content and GAD activity in gastric cancer. Med Sci Monit. 2001, 7: 377-381.
CAS
PubMed
Google Scholar
Barany M, Langer BG, Glick RP, Venkatasubramanian PN, Wilbur AC, Spigos DG: In vivo H-1 spectroscopy in humans at 1.5 T. Radiology. 1988, 167: 839-844.
Article
CAS
PubMed
Google Scholar
Bell JD, Cox IJ, Sargentoni J, Peden CJ, Menon DK, Foster CS, Watanapa P, Iles RA, Urenjak J: A 31P and 1H-NMR investigation in vitro of normal and abnormal human liver. Biochim Biophys Acta. 1993, 1225: 71-77.
Article
CAS
PubMed
Google Scholar
Cao Y, Sundgren PC, Tsien CI, Chenevert TT, Junck L: Physiologic and metabolic magnetic resonance imaging in gliomas. J Clin Oncol. 2006, 24: 1228-1235. 10.1200/JCO.2005.04.7233
Article
PubMed
Google Scholar
Gao H, Lu Q, Liu X, Cong H, Zhao L, Wang H, Lin D: Application of 1H NMR-based metabonomics in the study of metabolic profiling of human hepatocellular carcinoma and liver cirrhosis. Cancer Sci. 2009, 100: 782-785. 10.1111/j.1349-7006.2009.01086.x
Article
CAS
PubMed
Google Scholar
McConnell JR: Reduced levels of N-acetylaspartate in malignant brain tumors. CA Cancer J Clin. 1999, 49: 192- 10.3322/canjclin.49.3.192
Article
CAS
PubMed
Google Scholar
Hockley SL, Arlt VM, Brewer D, Te Poele R, Workman P, Giddings I, Phillips DH: AHR- and DNA-damage-mediated gene expression responses induced by benzo(a)pyrene in human cell lines. Chem Res Toxicol. 2007, 20: 1797-1810. 10.1021/tx700252n
Article
CAS
PubMed
Google Scholar
Puga A, Maier A, Medvedovic M: The transcriptional signature of dioxin in human hepatoma HepG2 cells. Biochem Pharmacol. 2000, 60: 1129-1142. 10.1016/S0006-2952(00)00403-2
Article
CAS
PubMed
Google Scholar
Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, et al.: Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res. 2005, 33: e175- 10.1093/nar/gni179
Article
PubMed Central
PubMed
Google Scholar
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003, 4: 249-264. 10.1093/biostatistics/4.2.249
Article
PubMed
Google Scholar
Benjamini Y, Hochberg Y: Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society Series B (Methodological). 1995, 57: 289-300.
Google Scholar
Lommen A, Weseman JM, Smith GO, Noteborn HPJM: On the detection of environmental effects on complex matrices combining off-line liquid chromatography and 1H-NMR. Biodegradation. 1998, 9: 513-525. 10.1023/A:1008398321079.
Article
CAS
Google Scholar
Lommen A: MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal Chem. 2009, 81: 3079-3086. 10.1021/ac900036d
Article
CAS
PubMed
Google Scholar