Volume 1 Supplement 1

BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology

Meeting abstracts

Edited by John Cumbers, Xu Gu, Jong Sze Wong

BioSysBio 2007: Systems Biology, Bioinformatics and Synthetic Biology. Go to conference site.

Manchester, UK11-13 January 2007

Vol 1 Suppl 1 concatenated PDF

Content type: Oral presentation

rHVDM – a fast and user-friendly R package to predict transcription factor targets from microarray time series data

Authors: Martino Barenco, Sonia Shah, Daniel Brewer, Robin Callard, Jaroslav Stark, Crispin Miller and Michael Hubank

Citation: BMC Systems Biology 2007 1(Suppl 1):S1

Published on: 8 May 2007
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Content type: Poster presentation

A quantitative model for the GCN4 translational control in Saccharomyces cerevisiae

Authors: Tao You, Alistair JP Brown and George M Coghill

Citation: BMC Systems Biology 2007 1(Suppl 1):P1

Published on: 8 May 2007
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Content type: Poster presentation

Elementary flux modes – state-of-the-art implementation and scope of application

Authors: Marco Terzer and Jörg Stelling

Citation: BMC Systems Biology 2007 1(Suppl 1):P2

Published on: 8 May 2007
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Content type: Oral presentation

Effect of microarray data heterogeneity on regulatory gene module discovery

Authors: Alok Mishra and Duncan Gillies

Citation: BMC Systems Biology 2007 1(Suppl 1):S2

Published on: 8 May 2007
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Content type: Poster presentation

Prediction and evolution of transcription factors and their evolutionary families in prokaryotes

Authors: Sarath Chandra Janga

Citation: BMC Systems Biology 2007 1(Suppl 1):P3

Published on: 8 May 2007
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Content type: Oral presentation

Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, CDA, by Streptomyces coelicolor

Authors: Raul Munoz-Hernandez, Ana Katerine de Carvalho Lima Lobato, Hong Bum Kim and Ferda Mavituna

Citation: BMC Systems Biology 2007 1(Suppl 1):S3

Published on: 8 May 2007
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Content type: Oral presentation

Modelling genetic regulatory networks from specified behaviours

Authors: Daniel Mateus, Jean-Paul Comet, Jean-Pierre Gallois and Pascale Le Gall

Citation: BMC Systems Biology 2007 1(Suppl 1):S4

Published on: 8 May 2007
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Content type: Poster presentation

Integration of SABIO-RK in workbenches for kinetic model design

Authors: Martin Golebiewski, Saqib Mir, Renate Kania, Olga Krebs, Andreas Weidemann, Ulrike Wittig and Isabel Rojas

Citation: BMC Systems Biology 2007 1(Suppl 1):P4

Published on: 8 May 2007
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Content type: Poster presentation

Visualizing regulatory interactions in metabolic networks

Authors: Stephan Noack, Aljoscha Wahl, Marco Oldiges and Wolfgang Wiechert

Citation: BMC Systems Biology 2007 1(Suppl 1):P5

Published on: 8 May 2007
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Content type: Oral presentation

BacGrid: simulations of bacteria using the grid

Authors: Michael Lees, Brian Logan and John King

Citation: BMC Systems Biology 2007 1(Suppl 1):S5

Published on: 8 May 2007
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Content type: Poster presentation

Modelling the cAMP pathway using BioNessie, and the use of BVP techniques for solving ODEs

Authors: Xu Gu, David Gilbert, Des Higham and Miles Houslay

Citation: BMC Systems Biology 2007 1(Suppl 1):P6

Published on: 8 May 2007
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Content type: Oral presentation

SABIO-RK: a database for biochemical reactions and their kinetics

Authors: Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann and Ulrike Wittig

Citation: BMC Systems Biology 2007 1(Suppl 1):S6

Published on: 8 May 2007
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Content type: Poster presentation

Modelling gradient perception and polarization in chemotaxing Dictyostelium cells

Authors: Jawahar Krishnan

Citation: BMC Systems Biology 2007 1(Suppl 1):P7

Published on: 8 May 2007
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Content type: Oral presentation

Noise characteristics of interlocked repressilators

Authors: Martin Hemberg and Mauricio Barahona

Citation: BMC Systems Biology 2007 1(Suppl 1):S7

Published on: 8 May 2007
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Content type: Poster presentation

Computational identification of tumour suppressor protein p53 target genes

Authors: Siew Chinn Fong, Fiona Paulin and Alastair Thompson

Citation: BMC Systems Biology 2007 1(Suppl 1):P8

Published on: 8 May 2007
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Content type: Oral presentation

Potential role of the glyoxalase pathway as a drug target in Leishmania infantum: an exact steady-state model analysis

Authors: Nuno Filipe Lages, Marta Sousa Silva, António EN Ferreira, Ana Maria Tomás, Carlos Cordeiro and Ana Ponces Freire

Citation: BMC Systems Biology 2007 1(Suppl 1):S8

Published on: 8 May 2007
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Content type: Poster presentation

Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis

Authors: Anyela Camargo and Francisco Azuaje

Citation: BMC Systems Biology 2007 1(Suppl 1):P9

Published on: 8 May 2007
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Content type: Oral presentation

Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic

Authors: Christin Sander, Farah Vohra, John Chattaway, Tom Hinson, John Sy, Jiongjun Bai, Jonathan Wells, Deepti Aswani, Vincent Rouilly, Chueh-Loo Poh, Matthieu Bultelle, Kirsten Jensen, David Mann, Paul Freemont and Richard Kitney

Citation: BMC Systems Biology 2007 1(Suppl 1):S9

Published on: 8 May 2007
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Content type: Poster presentation

A global statistical test for improved detection of gene activity

Authors: David JG Bakewell and Ernst Wit

Citation: BMC Systems Biology 2007 1(Suppl 1):P10

Published on: 8 May 2007
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Content type: Oral presentation

New tools for self-organized pattern formation

Authors: Kaj Bernhardt, Nikhilesh Singh Chand, Elizabeth Carter, Jisun Lee, Yang Xu, Xueni Zhu, Duncan Rowe, JW Ajioka, JM Goncalves, J Haseloff and G Micklem

Citation: BMC Systems Biology 2007 1(Suppl 1):S10

Published on: 8 May 2007
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BMC Systems Biology

BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology

Meeting abstracts

rHVDM – a fast and user-friendly R package to predict transcription factor targets from microarray time series data

A quantitative model for the GCN4 translational control in Saccharomyces cerevisiae

Elementary flux modes – state-of-the-art implementation and scope of application

Effect of microarray data heterogeneity on regulatory gene module discovery

Prediction and evolution of transcription factors and their evolutionary families in prokaryotes

Metabolic flux analysis to study the production of a non-ribosomal lipopeptide, CDA, by Streptomyces coelicolor

Modelling genetic regulatory networks from specified behaviours

Integration of SABIO-RK in workbenches for kinetic model design

Visualizing regulatory interactions in metabolic networks

BacGrid: simulations of bacteria using the grid

Modelling the cAMP pathway using BioNessie, and the use of BVP techniques for solving ODEs

SABIO-RK: a database for biochemical reactions and their kinetics

Modelling gradient perception and polarization in chemotaxing Dictyostelium cells

Noise characteristics of interlocked repressilators

Computational identification of tumour suppressor protein p53 target genes

Potential role of the glyoxalase pathway as a drug target in Leishmania infantum: an exact steady-state model analysis

Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis

Engineering a synthetic molecular oscillator based on the Lotka-Volterra dynamic

A global statistical test for improved detection of gene activity

New tools for self-organized pattern formation

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